Author

Bradford P. Taylor

Harvard UniversityORCID 0000-0001-7808-955XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:human· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1 Assay:metagenomics· 1 Organism:mouse· 1

Frequent Co-Authors

William Paul HanageiD· 2 shared Alanna CallendrelloiD· 1 shared Alex GreyiD· 1 shared Ami Siddharth BhattiD· 1 shared Anqi DaiiD· 1 shared Beau SchaefferiD· 1 shared Benjamin A. SiranosianiD· 1 shared Chen LiaoiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersGenomics

William Paul HanageORCID

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3 papers

Recent·Most cited

GenomicsMicrobial GenomicsPeer-reviewedSep 7, 2026

SARS-CoV-2 Intra-host Variation Shows Evidence of Transmission and Convergent Evolution in a University Surveillance Cohort

Léa Cavalli, Bradford P. Taylor, Beau Schaeffer…·William Paul Hanage

The paper analyzes SARS-CoV-2 intra-host variation in a university cohort to infer transmission events and assess within-host evolution, finding limited transmission of variants and evidence of positive selection at a recurrent site.

DOI 10.1099/mgen.0.001784

humanwhole-genome sequencing

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GenomicsbioRxivPreprintOct 17, 2022

Beyond consensus sequence: a quantitative scheme for inferring transmission using deep sequencing in a bacterial transmission model

Madikay Senghore, Hannah M. Read, Priyali Oza…·Siouxsie Wiles

The paper develops a model to infer bacterial transmission using deep sequencing data from a mouse model, showing that within-host variant abundance differences can accurately identify transmission pairs.

DOI 10.1101/2022.10.17.512634

mousewhole-genome sequencing

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Systems BiologybioRxivPreprintAug 23, 2021

A compilation of fecal microbiome shotgun metagenomics from hospitalized patients undergoing hematopoietic cell transplantation

Jinyuan Yan, Chen Liao, Bradford P. Taylor…·João B. Xavier

The paper compiles shotgun metagenomic data from stool samples of hospitalized hematopoietic cell transplant patients to enhance microbiome analysis beyond taxonomic composition.

3 citations

humanmetagenomics

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