Ryan L. Clark

The paper uses LSTM to model synthetic human gut microbiome dynamics, outperforming traditional models and identifying key microbial drivers of metabolite production.

This paper develops a model-guided framework to design high-diversity synthetic human gut communities by optimizing culture conditions and leveraging ecological models.

This study shows that species richness in synthetic human gut communities determines the outcome of C. difficile invasion, with mechanisms like acidification and resource competition playing key roles.

The paper designs a synthetic human gut microbiome to explore butyrate production using a model-guided experimental framework.

The paper introduces MINI-Drop, a method to infer microbial interactions in microfluidic droplets, showing it can accurately determine pairwise and higher-order interactions.

The paper describes the design and construction of an affordable photobioreactor system capable of cultivating up to 12 independent 1 L cyanobacterial cultures at a cost lower than a single commercial unit.