Author

Arpan Das

Northwestern UniversityORCID 0000-0001-7890-4884Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Organism:mouse· 2 Assay:spatial transcriptomics· 2 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Research Focus:dimensionality reduction· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Dongmei WangiD· 2 shared Rui YiiD· 2 shared Annalina Che· 1 shared Anumeha SinghiD· 1 shared Glen A. BjerkeiD· 1 shared Haimin LiiD· 1 shared Jimin Han· 1 shared Megan A. Wong· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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2 shared papersDevelopmental Biology

Dongmei WangORCID

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2 papers

Recent·Most cited

Developmental BiologybioRxivPreprintJan 11, 2026

Coordinated inhibition of SOX9 and cell cycle progression by microRNA-200 restricts sebaceous gland fate specification

Arpan Das, Yuheng C Fu, Haimin Li…·Rui Yi

This study shows that miR-200 inhibits SOX9 and cell cycle progression to block sebaceous gland fate specification in hair follicles.

1 citation

mousebulk RNA-seq

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BioinformaticsbioRxivPreprintJan 4, 2023

Reconstruction of 3-dimensional tissue organization at the single-cell resolution

Yuheng C. Fu, Arpan Das, Dongmei Wang…·Rui Yi

This paper introduces scHolography, a deep learning method to reconstruct 3D tissue organization from single-cell transcriptome data, enabling analysis of cell-cell interactions and spatial heterogeneity.

1 citation

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