Author

Friedemann E. Gebhardt

Technical University of MunichORCID 0000-0001-7948-4906Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:cell-cell communication· 1 Research Focus:database / resource· 1 Research Focus:deconvolution· 1 Research Focus:drug response / drug discovery· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Ebenezer Foster-NyarkoiD· 3 shared Ela SauerborniD· 3 shared Lara UrbaniD· 3 shared Nina WantiaiD· 2 shared Rhys T. WhiteiD· 2 shared Anna-Lena Kalteis· 1 shared Annika SobkowiakiD· 1 shared Daniel GygaxiD· 1 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 34 mutual co-author links

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3 shared papersGenomics

Ebenezer Foster-NyarkoORCID

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3 papers

Recent·Most cited

Nanopore metagenomic sequencing links clinically relevant resistance determinants to pathogens

Harika Ürel, Ela Sauerborn, Michael Biggel, Friedemann E. Gebhardt, Ebenezer Foster-Nyarko, Silvio D. Brugger, Rhys T. White, Søren Heidelbach, Mads Albertsen, Francis Muchaamba, Tim Reska, Marc J. A. Stevens, Roger Stephan, Richard Fetherston, Lara Urban

This paper develops a method to link plasmid-encoded AMR genes to their bacterial hosts using nanopore sequencing methylation data, achieving high accuracy in clinical samples.

Microbial Genomics · Sep 21, 2026Peer-reviewedGenomics

Verification of nanopore sequencing technology for clinical carbapenem-resistant Enterobacterales surveillance

Ela Sauerborn, Ebenezer Foster-Nyarko, Katrin Schröder, Annika Sobkowiak, Samir V. F. Atum, Friedemann E. Gebhardt, Nina Wantia, Lara Urban

This study verifies nanopore sequencing for CRE surveillance by comparing it to routine diagnostics and determining required sequencing depths for various clinical tasks.

bioRxiv · Aug 10, 2026 · PreprintGenomics

Resolving plasmid-encoded carbapenem resistance dynamics and reservoirs in a hospital setting through nanopore sequencing

Ela Sauerborn, Rhys T. White, Anna-Lena Kalteis, Daniel Gygax, Ebenezer Foster-Nyarko, Nina Wantia, Friedemann E. Gebhardt, Lara Urban

This study uses long-read nanopore sequencing to analyze carbapenem resistance dynamics in a hospital setting, revealing plasmid spread and environmental reservoirs.

Microbial Genomics · Feb 12, 2026Peer-reviewedMicrobiology