Author

Devaki Bhaya

Carnegie Institution for ScienceORCID 0000-0001-7965-4258Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Devaki Bhaya1 paper

Biology Disciplines

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Microbiology· 2 Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 3 Research Focus:cell type annotation· 2 Research Focus:database / resource· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:cell-cell communication· 1

Frequent Co-Authors

Arthur Robert GrossmaniD· 2 shared Feiqiao Brian YuiD· 2 shared Adrienne B. NarroweiD· 1 shared Alexander J. ProbstiD· 1 shared Alexander SczyrbaiD· 1 shared Amanda N. SheltoniD· 1 shared Amar D. ParvateiD· 1 shared Andrey Victorovich MalkovskiyiD· 1 shared

Activity by Year

2022-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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2 shared papersMicrobiology

Arthur Robert GrossmanORCID

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Author profile →

4 papers

Recent·Most cited

Illuminating microbial mat assembly: Cyanobacteria and Chloroflexota cooperate to structure light-responsive biofilms

Freddy Bunbury, Carlos Rivas, Victoria Calatrava, Andrey Victorovich Malkovskiy, Lydia‐Marie Joubert, Amar D. Parvate, James E. Evans, Arthur Robert Grossman, Devaki Bhaya

This study investigates how cyanobacteria and Chloroflexota cooperate in forming microbial mats through motility and biofilm formation.

Proceedings of the National Academy of Sciences · Jan 29, 2025Peer-reviewedMicrobiology

Abundant and active community members respond to the diel cycle in hot spring phototrophic mats

Amanda N. Shelton, Feiqiao Brian Yu, Arthur Robert Grossman, Devaki Bhaya

The paper analyzes metagenomic and metatranscriptomic data from hot spring microbial mats to show diel gene expression patterns in key taxa.

The ISME Journal · Jan 1, 2025Peer-reviewedMicrobiology

Reference-free Structural Variant Detection inMicrobiomes via Long-read Coassembly Graphs

Kristen D. Curry, Feiqiao Brian Yu, Summer E. Vance, Santiago Segarra, Devaki Bhaya, Rayan Chikhi, Eduardo P. C. Rocha, Todd J. Treangen

This paper introduces rhea, a reference-free method for detecting structural variants in microbiomes using long-read coassembly graphs, showing improved performance over existing methods in simulated and real metagenomic data.

Bioinformatics · Apr 18, 2024Peer-reviewedBioinformatics

A five-fold expansion of the global RNA virome reveals multiple new clades of RNA bacteriophages

Uri Neri, Yuri I. Wolf, Simon Roux, Antônio Pedro Camargo, Benjamin Lee, Darius Kazlauskas, I. Min Chen, Natalia Ivanova, Lisa Zeigler Allen, David Páez-Espino, Donald A. Bryant, Devaki Bhaya, Adrienne B. Narrowe, Alexander J. Probst, Alexander Sczyrba, , Vincent J. Denef

The paper expands the global RNA virome by five-fold, identifying new clades of RNA bacteriophages and revealing novel virus-host interactions.

Cell · Sep 28, 2022Peer-reviewedGenomics