Author
Pennsylvania State UniversityORCID 0000-0001-8031-5069Unclaimed ORCID profile · follow to get notified of new preprints
6 papers
Recent·Most cited
Aysam Guerler, Dannon Baker, Marius van den Beek…·Anton Nekrutenko
The paper presents a pipeline for predicting genome-wide protein-protein interactions and generating structural models, validated on human and yeast genomes and applied to SARS-CoV2 proteins.
Alexander G. Lucaci, Jordan D. Zehr, Stephen D. Shank…·Sergei L. Kosakovsky Pond
RASCL rapidly assesses SARS-CoV-2 clades using molecular sequence analysis to detect selection pressures in emerging variants.
VIJAY NAGAMPALLI, Jayadev Joshi, Nate Coraor…·Daniel J Blankenberg
The paper describes integrating refgenie into Galaxy to manage and share reference datasets, with tools for retrieval and a global repository for easy access.
Wolfgang Maier, Simon A. Bray, Marius van den Beek…·Anton Nekrutenko
The paper presents a global, community-maintained platform for analyzing SARS-CoV-2 genomic data, demonstrating its utility in variant detection and reanalysis of existing datasets.
Dannon Baker, Marius van den Beek, Daniel J Blankenberg…·Steven Weaver
The paper highlights the importance of open data and analytics in responding to public health emergencies, using COVID-19 genomic data to demonstrate the effectiveness of community-driven software tools and infrastructure.
Björn Grüning, Ryan Dale, Andreas Sjödin…·Matthew L. Workentine
Bioconda provides a sustainable, comprehensive distribution of bioinformatics software using Conda for reproducible analysis across platforms.