Author

Frederik Coppens

Ghent UniversityORCID 0000-0001-6565-5145Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:software / tool· 4 Research Focus:benchmarking· 3 Research Focus:database / resource· 3 Approach:experimental assay· 3 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:variant calling· 1

Frequent Co-Authors

Björn Andreas GrüningiD· 4 shared Simon L. GladmaniD· 4 shared Daniel J BlankenbergiD· 3 shared Dave BouvieriD· 3 shared Marius van den BeekiD· 3 shared Wolfgang MaieriD· 3 shared Andrew J. LonieiD· 2 shared Anton NekrutenkoiD· 2 shared

Activity by Year

2017-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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4 shared papersBioinformatics

Björn Andreas GrüningORCID

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Author profile →

5 papers

Recent·Most cited

Galaxy Training: A Powerful Framework for Teaching!

Saskia Hiltemann, Helena Rasche, Simon L. Gladman, Hans-Rudolf Hotz, Delphine Larivière, Daniel J Blankenberg, Pratik Dilip Jagtap, Thomas Wollmann, Anthony Bretaudeau, Nadia Goué, Timothy J. Griffin, Coline Royaux, Yvan Le Bras, Subina Mehta, Anna Syme, , the Galaxy Training Network

The paper introduces Galaxy Training Network (GTN) as a framework for creating and sharing FAIR training materials for data analysis, with recent improvements to support educators and expand its use in various learning environments.

PLoS Computational Biology · Jan 9, 2023Peer-reviewedBioinformatics

Expanding the Galaxy's reference data

VIJAY NAGAMPALLI, Jayadev Joshi, Nate Coraor, Jennifer Hillman‐Jackson, Dave Bouvier, Marius van den Beek, Ignacio Eguinoa, Frederik Coppens, John Davis, Michał Stolarczyk, Nathan C. Sheffield, Simon L. Gladman, Gianmauro Cuccuru, Björn Andreas Grüning, Nicola Soranzo, , Daniel J Blankenberg

The paper describes integrating refgenie into Galaxy to manage and share reference datasets, with tools for retrieval and a global repository for easy access.

Bioinformatics Advances · Jan 1, 2022Peer-reviewedBioinformatics

Freely accessible ready to use global infrastructure for SARS-CoV-2 monitoring

Wolfgang Maier, Simon A. Bray, Marius van den Beek, Dave Bouvier, Nathan Coraor, Milad Miladi, Babita Singh, Jordi Rambla, Dannon Baker, Nathan P. Roach, Simon L. Gladman, Frederik Coppens, Darren Patrick Martin, Andrew J. Lonie, Björn Andreas Grüning, , Anton Nekrutenko

The paper presents a global, community-maintained platform for analyzing SARS-CoV-2 genomic data, demonstrating its utility in variant detection and reanalysis of existing datasets.

bioRxiv · Mar 25, 2021 · PreprintBioinformatics

No more business as usual: agile and effective responses to emerging pathogen threats require open data and open analytics

Dannon Baker, Marius van den Beek, Daniel J Blankenberg, Dave Bouvier, John M. Chilton, Nate Coraor, Frederik Coppens, Ignacio Eguinoa, Simon L. Gladman, Björn Andreas Grüning, Nicholas Keener, Delphine Larivière, Andrew J. Lonie, Sergei L. Kosakovsky Pond, Wolfgang Maier, , Steven Weaver

The paper highlights the importance of open data and analytics in responding to public health emergencies, using COVID-19 genomic data to demonstrate the effectiveness of community-driven software tools and infrastructure.

PLoS Pathogens · Aug 13, 2020Peer-reviewedGenomics

PhyD3: a phylogenetic tree viewer with extended phyloXML support for functional genomics data visualization

Łukasz Kreft, Alexander Botzki, Frederik Coppens, Klaas Vandepoele, Michiel Van Bel

PhyD3 extends the PhyloXML standard for functional genomics data visualization and provides an open-source web tool for advanced phylogenetic tree display.

Bioinformatics · May 18, 2017Peer-reviewedBioinformatics