Author

Jérôme Collemare

Westerdijk Fungal Biodiversity InstituteORCID 0000-0001-8152-6642Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Evolutionary Biology· 1 Genomics· 1 Microbiology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Organism:fungi (other)· 3 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Assay:proteomics· 2 Assay:ChIP-seq· 1 Approach:comparative / phylogenetic analysis· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Michael F. SeidliD· 3 shared Xin ZhangiD· 2 shared Alessandro VaiiD· 1 shared Alice VayssièresiD· 1 shared Bagdevi MishraiD· 1 shared Bartosz UlaszewskiiD· 1 shared Bruno Le CamiD· 1 shared Carl H. MesarichiD· 1 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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3 shared papersEvolutionary Biology

Michael F. SeidlORCID

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Author profile →

5 papers

Recent·Most cited

Evolutionary BiologybioRxivPreprintOct 1, 2026

Consolidating species boundaries in the Fusarium oxysporum species complex based on genomic evidence

Jasper Bell, Joris van Os, Marco Thines…·Michael F. Seidl

This study consolidates species boundaries in the Fusarium oxysporum species complex using genomic data, revealing redundant species and two novel lineages.

DOI 10.64898/2026.09.25.754427

fungi (other)whole-genome sequencing

𝕏 PostBluesky

MicrobiologybioRxivPreprintSep 14, 2026

Ancient MAX Effector Variants of a Fungal Pathogen Evade Apoplastic Immunity in Apple

Mélanie Sannier, Sirine Benmamar, Jérôme Collemare…·Maël Baudin

This study identifies AvrRvi6 as a fungal effector that evades Rvi6-mediated immunity in apple, revealing ancient virulence diversity in wild Malus species.

2 citations

proteomicscomparative / phylogenetic analysis

𝕏 PostBluesky

GenomicsPhytopathology ResearchPeer-reviewedMay 20, 2025

Association of secondary metabolite gene clusters with host-specific lineages of the cereal blast fungus Pyricularia oryzae

Khyati Mehta, Jorge Carlos Navarro-Muñoz, Sayali Bakore…·Rajesh Patkar

The paper identifies secondary metabolite gene clusters in Pyricularia oryzae lineages associated with host specialization and virulence.

DOI 10.1186/s42483-025-00322-8

statistical modelgene regulatory network inference

𝕏 PostBluesky

BioinformaticsGenome Biology and EvolutionPeer-reviewedOct 24, 2024

Genomic localization bias of secondary metabolite gene clusters and association with histone modifications in Aspergillus

Xin Zhang, Iseult Leahy, Jérôme Collemare, Michael F. Seidl

The paper investigates the genomic localization of secondary metabolite gene clusters in Aspergillus and their association with histone modifications, finding a bias for low-synteny regions and differential histone PTM regulation.

6 citations

fungi (other)DNA methylation

𝕏 PostBluesky

Molecular BiologybioRxivPreprintJan 31, 2023

Detection and quantification of the histone code in the fungal genus Aspergillus

Xin Zhang, Roberta Noberini, Alessandro Vai…·Jérôme Collemare

The paper detects and quantifies histone post-translational modifications (PTMs) in three Aspergillus species, revealing strain-specific variations in PTM abundance and novel PTMs.

DOI 10.1101/2023.01.31.526455

fungi (other)proteomics

𝕏 PostBluesky