Lucie Bittner

This study uses single-cell transcriptomics to analyze reproductive life stages of Acantharia, identifying genetic evidence for a sexual cycle involving gamete-like swarmers.

SENSE-PPI uses deep learning to predict protein-protein interactions across species and between proteins, showing high accuracy and versatility.

The paper develops a computational workflow to analyze unassigned protist genetic barcodes across marine surveys, identifying spatio-temporal patterns in Syndiniales parasites.

The paper introduces a method to separate host and symbiont reads in holobiont transcriptomes, improving assembly quality and enabling functional analysis.

The paper uses a sequence similarity network to analyze dinoflagellate transcriptomes, identifying novel protein domains linked to toxicity and symbiosis.