Author

Pavla Debeljak

Centre National de la Recherche ScientifiqueORCID 0000-0002-5542-0358Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Dylan Klein· 1 shared Éric DuchaudiD· 1 shared Fabrice NotiD· 1 shared Hayato YoshiokaiD· 1 shared Hiroyoshi IwataiD· 1 shared Iris RizosiD· 1 shared Keith A. JolleyiD· 1 shared Lucie BittneriD· 1 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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1 shared paperGenomics

Dylan Klein

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3 papers

Recent·Most cited

MicrobiologybioRxivPreprintSep 16, 2026

FlavoTyper: a genome-based in-silico serotyping tool for the fish pathogen Flavobacterium psychrophilum

Salma MBARKI, Pavla Debeljak, Mathilde Carpentier…·Éric Duchaud

FlavoTyper is a genome-based in-silico tool for serotyping Flavobacterium psychrophilum, showing strong association between O-types and host fish species.

DOI 10.64898/2026.09.14.751350

whole-genome sequencingstatistical model

𝕏 PostBluesky

BioinformaticsEnvironmental MicrobiomePeer-reviewedApr 10, 2026

Interpretable multi-omics machine learning reveals drought-driven shifts in plant-microbe interactions

Hayato Yoshioka, Pavla Debeljak, Soizic Prado…·Hiroyoshi Iwata

The paper uses interpretable machine learning to analyze multi-omics data from soybean under drought stress, identifying key biomarkers and interactions influencing plant phenotypes.

7 citationstop 1%

plant (other)metabolomics

𝕏 PostBluesky

GenomicsISME CommunicationsPeer-reviewedFeb 28, 2023

Beyond the limits of the unassigned protist microbiome: inferring large-scale spatio-temporal patterns of marine parasites

Iris Rizos, Pavla Debeljak, Thomas Finet…·Lucie Bittner

The paper develops a computational workflow to analyze unassigned protist genetic barcodes across marine surveys, identifying spatio-temporal patterns in Syndiniales parasites.

25 citations

metagenomicsstatistical model

𝕏 PostBluesky