Patrick Denis Browne

The paper analyzes microbial metabolic potential for CO2 and CH4 emissions in prawn ponds using genome-resolved metagenomics, finding that seasonal dynamics influence functional gene abundances more than management practices.

TaxVAMB improves metagenome binning by combining tetranucleotide frequencies and co-abundances with taxonomic annotations, outperforming existing methods on benchmark and real datasets.

This study isolates Arthrobacter sp. 11c, which fully degrades hederagenin-based saponins within six hours, revealing unique glycosidase gene clusters involved in saponin metabolism.

The paper examines cultivar-dependent Pseudomonas microdiversity in wheat rhizosphere, linking it to disease resistance and root diameter.

This paper presents the first whole genome sequence and mRNA transcriptome of the copepod Apocyclops royi, providing genomic resources for further study.

The paper reports the first genome and transcriptome of Acartia tonsa, revealing a 14-fold genome size difference among copepods and expanding genetic resources for evolutionary studies.