Author

Katharine Yu

University of California, San FranciscoORCID 0000-0001-8310-8815Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

Marina SirotaiD· 2 shared Adolfo García‐SastreiD· 1 shared Albert Vallejo-GraciaiD· 1 shared Atul Janardhan ButteiD· 1 shared Bin CheniD· 1 shared Brian L. LeiD· 1 shared Christina S. F. YauiD· 1 shared Christine LiiD· 1 shared

Activity by Year

2019-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Marina SirotaORCID

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2 papers

Recent·Most cited

BioinformaticsScientific ReportsPeer-reviewedJun 10, 2021

Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19

Brian L. Le, Gaia Andreoletti, Tomiko Oskotsky…·Marina Sirota

A computational drug repositioning pipeline identifies potential therapeutics for COVID-19 by matching SARS-CoV-2 gene expression signatures to drug profiles.

49 citationstop 2%

humanbulk RNA-seq

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BioinformaticsNature CommunicationsPeer-reviewedAug 8, 2019

Comprehensive transcriptomic analysis of cell lines as models of primary tumor samples across 22 tumor types

Katharine Yu, Bin Chen, Dvir Aran…·Marina Sirota

The paper evaluates cell lines as models of primary tumors across 22 types using transcriptomic data, finding cell-cycle pathways are consistently upregulated in cell lines.

158 citationstop 2%

humanbulk RNA-seq

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