Author

Johanna F.B. Pagano

University of AmsterdamORCID 0000-0001-8331-2242Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:zebrafish· 5 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1

Frequent Co-Authors

Han RauwerdaiD· 5 shared Herman P. SpainkiD· 5 shared Timo M. BreitiD· 5 shared Ulrike Nehrdich· 5 shared Wim A. EnsinkiD· 5 shared Marina F van Olst· 4 shared Rob J. DekkeriD· 4 shared Wim C. de LeeuwiD· 4 shared

Activity by Year

2020-2022 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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5 shared papersDevelopmental Biology

Han RauwerdaORCID

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Author profile →

5 papers

Recent·Most cited

Cellular Factors Involved in Transcriptome Dynamics in Early Zebrafish Embryogenesis

Han Rauwerda, Johanna F.B. Pagano, Wim C. de Leeuw, Wim A. Ensink, Marina F van Olst, Ulrike Nehrdich, Martijs J. Jonker, Herman P. Spaink, Timo M. Breit

The paper identifies regulatory factors and mechanisms governing transcriptome dynamics in early zebrafish embryogenesis through computational and small-RNA sequencing analyses.

bioRxiv · Sep 29, 2022 · PreprintDevelopmental Biology

New observations on non-coding RNAs involved in the dual translation system in zebrafish development.

Timo M. Breit, Johanna F.B. Pagano, Pjotr L. van der Jagt, Ellis Mittring, Wim A. Ensink, Marina F van Olst, Selina M. van Leeuwen, Wim C. de Leeuw, Ulrike Nehrdich, Herman P. Spaink, Han Rauwerda, Rob J. Dekker

The paper identifies maternal-specific non-coding RNAs involved in zebrafish development's dual translation system, complementing previously discovered RNA types.

bioRxiv · Feb 7, 2020 · PreprintDevelopmental Biology

Maternal- and somatic-type snoRNA expression and processing in zebrafish development

Johanna F.B. Pagano, Mauro D. Locati, Wim A. Ensink, Marina F van Olst, Selina M. van Leeuwen, Wim C. de Leeuw, Ulrike Nehrdich, Herman P. Spaink, Han Rauwerda, Martijs J. Jonker, Rob J. Dekker, Timo M. Breit

The paper identifies maternal- and somatic-type snoRNA expression patterns in zebrafish, showing differential regulation through transcription and RNA processing.

bioRxiv · Feb 6, 2020 · PreprintDevelopmental Biology

An alternative spliceosome defined by distinct snRNAs in early zebrafish embryogenesis

Johanna F.B. Pagano, Rob J. Dekker, Wim A. Ensink, Marina F van Olst, Alex Bos, Selina M. van Leeuwen, Wim C. de Leeuw, Ulrike Nehrdich, Herman P. Spaink, Han Rauwerda, Martijs J. Jonker, Timo M. Breit

The paper identifies embryogenesis-specific spliceosome variants in zebrafish using snRNA gene analysis and PCR-sequencing, revealing distinct snRNA variants with sequence differences in loop structures.

bioRxiv · Jan 31, 2020 · PreprintDevelopmental Biology

Immunoglobulin switch-like recombination regions implicated in the formation of extrachromosomal circular 45S rDNA involved in the maternal-specific translation system of zebrafish

Timo M. Breit, Han Rauwerda, Johanna F.B. Pagano, Wim A. Ensink, Ulrike Nehrdich, Herman P. Spaink, Rob J. Dekker

The paper identifies Ig switch-like recombination regions in zebrafish 45S rDNA loci that are involved in the formation of extrachromosomal circular DNA during oogenesis.

bioRxiv · Jan 31, 2020 · PreprintDevelopmental Biology