Rob J. Dekker

The paper identifies pervasive short hairpin RNA structures in non-encapsidated viruses and shows their association with structural constraints and evolutionary origins.

The paper identifies a novel seaweed virus with extreme GC3 codon bias and pseudoambigrammatic characteristics, suggesting a new RNA virus survival strategy.

The paper identifies new and variant Potyviruses in Asparagales plants from a Dutch urban botanic garden using smallRNA-seq and RNA-seq.

The paper identifies a new Polerovirus species in Asparagaceae plants through RNA-seq and smallRNA-seq, distinguishing it from known viruses by its P0 protein sequence.

This study discovers a new Phenuivirus species in Lachenalia plants and identifies co-evolutionary patterns in RNA sequence motifs.

The paper describes the discovery of a new Betaflexivirus species in Ferraria crispa plants through smallRNA-seq and RNA-seq analysis.

The paper identifies four new viruses in seaweed species through small RNA sequencing, highlighting previously unrecognized viral diversity in seaweeds.

This study determines the genome sequences of three KoMV variants from Zantedeschia cultivars and identifies nucleotide and protein differences compared to the RefSeq sequence.

The paper identifies maternal-specific non-coding RNAs involved in zebrafish development's dual translation system, complementing previously discovered RNA types.

The paper identifies maternal- and somatic-type snoRNA expression patterns in zebrafish, showing differential regulation through transcription and RNA processing.

The paper identifies embryogenesis-specific spliceosome variants in zebrafish using snRNA gene analysis and PCR-sequencing, revealing distinct snRNA variants with sequence differences in loop structures.

The paper identifies Ig switch-like recombination regions in zebrafish 45S rDNA loci that are involved in the formation of extrachromosomal circular DNA during oogenesis.