Inferring extrinsic factor-dependent single-cell transcriptome dynamics using a deep generative model
Yasuhiro Kojima, Yuko Arioka, Haruka Hirose, Shuto Hayashi, Yusuke Mizuno, Keiki Nagaharu, Hiroki Okumura, Masato Ishikawa, Kohshi Ohishi, Yutaka Suzuki, Norio Ozaki, Teppei Shimamura
ExDyn is a deep generative model that estimates single-cell transcriptome dynamics influenced by extrinsic factors, showing improved accuracy over existing methods.
bioRxiv · Apr 1, 2024 · PreprintBioinformatics