Author

Arzucan Özgür

Boğaziçi UniversityORCID 0000-0001-8376-1056Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Organism:human· 2 Research Focus:cell-cell communication· 1 Approach:large language model· 1 Organism:non-human primate· 1 Assay:protein sequence· 1 Assay:proteomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Benu BansaliD· 2 shared Hasin RehanaiD· 2 shared Junguk HuriD· 2 shared Yongqun Oliver HeiD· 2 shared Abdullatif Köksal· 1 shared Alan RuttenbergiD· 1 shared Alexander D. DiehliD· 1 shared Alexander DavydoviD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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2 shared papersBioinformatics

Benu BansalORCID

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3 papers

Recent·Most cited

BioinformaticsScientific DataPeer-reviewedApr 30, 2026

VO: The Vaccine Ontology

Jie Zheng, Yu Lin, Anthony Huffman…·Yongqun Oliver He

The paper introduces the Vaccine Ontology (VO), a standardized framework for representing vaccines and related data, enhancing data integration and AI research.

3 citations

humannon-human primate

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BioinformaticsbioRxivPreprintApr 7, 2025

Ontology-based Protein-Protein Interaction Explanation Using Large Language Models

Nur Bengisu Çam, Hasin Rehana, Jie Zheng…·Arzucan Özgür

This study uses large language models and ontologies to extract and explain protein-protein interactions from scientific literature, showing improved performance with parameter-efficient fine-tuning.

DOI 10.1101/2025.04.07.647599

protein sequencelarge language model

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BioinformaticsWorkshop on NLP for COVID-19 (NLP-COVID19)Peer-reviewedJan 1, 2020

Vapur: A Search Engine to Find Related Protein - Compound Pairs in COVID-19 Literature

Abdullatif Köksal, Hilal Dönmez, Rıza Özçelik…·Arzucan Özgür

Vapur is a search engine that finds protein-chemical pairs in COVID-19 literature using a relation-oriented inverted index.

11 citationstop 3%

humanproteomics

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