Author

Paul H. Atkinson

Victoria University of WellingtonORCID 0000-0001-8453-2458Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Systems Biology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Organism:yeast· 2 Assay:scRNA-seq· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Andrew B. MunkacsiiD· 3 shared Eliatan NiktabiD· 2 shared Bede P. BusbyiD· 1 shared Christina A. RobertsiD· 1 shared Cintya E. del Rio Hernandez· 1 shared Dinindu Senanayake· 1 shared Ingrid WinshipiD· 1 shared Jeffrey P. Sheridan· 1 shared

Activity by Year

2018-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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3 shared papersSystems Biology

Andrew B. MunkacsiORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMay 18, 2023

Ordinary differential equations to construct invertible generative models of cell type and tissue-specific regulatory networks

Eliatan Niktab, Paul H. Atkinson, Mark Walterfang…·Andrew B. Munkacsi

The paper introduces NS-DIMCORN, a generative model using ODEs to reconstruct gene regulatory networks from scRNA-seq data, outperforming existing methods in accuracy.

1 citation

scRNA-seqstatistical model

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Systems BiologyMicrobiology SpectrumPeer-reviewedMar 22, 2023

Network analysis reveals the molecular bases of statin pleiotropy that vary with genetic background

Cintya E. del Rio Hernandez, Lani J. Campbell, Paul H. Atkinson, Andrew B. Munkacsi

The paper identifies genetic interaction networks in yeast that mediate statin pleiotropy and translates findings to human drug targets.

2 citations

yeaststatistical model

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Systems BiologybioRxivPreprintOct 16, 2018

Master regulators of genetic interaction networks mediating statin drug response in Saccharomyces cerevisiae vary with genetic background

Bede P. Busby, Eliatan Niktab, Christina A. Roberts…·Paul H. Atkinson

The paper identifies master regulators of genetic interaction networks mediating statin response in yeast, showing variability across genetic backgrounds.

2 citations

yeastwhole-genome sequencing

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