Jaspreet Mahindroo

The paper introduces TyphiNET, a dashboard for exploring Typhi genomics data to support public health decisions on antimicrobial resistance and vaccine implementation.

EnviroAmpDesigner designs multiplex PCR primer panels for detecting and subtyping specific bacteria in environmental samples, focusing on specificity and minimizing off-target amplification.

AmpliconTyper is a tool for analysing ONT multiplex amplicon sequencing data from environmental samples, using machine learning to classify reads and identify SNPs.

The paper reports whole genome sequencing of Enteroaggregative Escherichia coli strains from human, animal, and environmental sources in India, identifying sequence types and clonal complexes.

The paper identifies azithromycin-resistant Salmonella Typhi in Northern India, showing independent emergence of resistance and highlighting the need for typhoid conjugate vaccines.