Author

Jakub Lipiński

ORCID 0000-0001-8472-5321Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Assay:Hi-C· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:ChIP-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

Dariusz PlewczyńskiiD· 2 shared Abhishek AgarwaliD· 1 shared Armen AbnousiiD· 1 shared Benxia HuiD· 1 shared Bing ReniD· 1 shared Cheynna CrowleyiD· 1 shared Di WuiD· 1 shared Hyejung WoniD· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersGenomics

Dariusz PlewczyńskiORCID

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2 papers

Recent·Most cited

GenomicsScientific ReportsPeer-reviewedJul 20, 2023

Enhanced performance of gene expression predictive models with protein-mediated spatial chromatin interactions

Mateusz Chiliński, Jakub Lipiński, Abhishek Agarwal…·Dariusz Plewczyński

The paper improves gene expression prediction models by incorporating protein-mediated spatial chromatin interactions, resulting in significant performance gains across multiple cell lines.

4 citations

ChIP-seqHi-C

𝕏 PostBluesky

BioinformaticsComputational and Structural Biotechnology JournalPeer-reviewedDec 29, 2020

FIREcaller: Detecting Frequently Interacting Regions from Hi-C Data

Cheynna Crowley, Yuchen Yang, Yunjiang Qiu…·Yun Li

FIREcaller detects frequently interacting regions from Hi-C data and shows their association with gene regulation and GWAS variants in human tissues.

37 citations

humanHi-C

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