Author

Zuzana Loncová

Innsbruck Medical UniversityORCID 0000-0001-8492-7214Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Organism:human· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Assay:imaging· 2 Assay:spatial transcriptomics· 2 Research Focus:benchmarking· 1 Research Focus:cell-cell communication· 1

Frequent Co-Authors

Dietmar RiederiD· 3 shared Zlatko TrajanoskiiD· 3 shared Anne KrogsdamiD· 2 shared Daniel NeureiteriD· 2 shared Florian HuemeriD· 2 shared Georgios FotakisiD· 2 shared Marieke E. IjsselsteijniD· 2 shared Noel F.C.C. de MirandaiD· 2 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersBioinformatics

Dietmar RiederORCID

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3 papers

Recent·Most cited

BioinformaticsCancer CellPeer-reviewedJan 1, 2026

Single-cell integration and multi-modal profiling reveals phenotypes and spatial organization of neutrophils in colorectal cancer

Valentin Marteau, Niloofar Nemati, Kristina Handler…·Zlatko Trajanoski

The paper integrates single-cell data from CRC patients to identify immune subtypes and neutrophil phenotypes, revealing their spatial organization and tumor-induced changes.

37 citationstop 1%

humanscRNA-seq

𝕏 PostBluesky

Cancer BiologybioRxivPreprintAug 21, 2024

Conventional therapy induces tumor immunoediting and modulates the immune contexture in colorectal cancer

Georgios Fotakis, Dietmar Rieder, Zuzana Loncová…·Zlatko Trajanoski

This study shows conventional therapy in CRC induces immunoediting and changes immune contexture, with AI identifying mucin deposits as a potential surrogate marker.

DOI 10.1101/2024.08.21.608938

humanbulk RNA-seq

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BioinformaticsGenome MedicinePeer-reviewedMay 24, 2019

✦ In-depth digest

Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data

Francesca Finotello, Clemens Mayer, Christina Plattner…·Zlatko Trajanoski

quanTIseq estimates absolute fractions of ten immune cell types from bulk RNA-seq; across TCGA, CXCL9/CXCR3 expression, not mutational load, tracks CD8+ T cell infiltration.

1,546 citationstop 1%

humanbulk RNA-seq

𝕏 PostBluesky