Adam McDermaid

IRIS-DGE is a server-based tool for differential gene expression analysis that integrates multiple R-based methods and provides interactive visualizations for RNA-seq data.

ViDGER provides visualization tools to interpret DGE results from RNA-seq data using Cuffdiff, DESeq2, and edgeR.

This study introduces RECTA, a computational pipeline for regulon prediction in Lactococcus lactis, identifying 51 regulons and validating 14 with acid stress response relevance.

GeneQC estimates the reliability of gene expression levels from RNA-Seq data by analyzing mapping uncertainty, improving downstream analysis validity.