Author

Antonis Giakountis

University of ThessalyORCID 0000-0001-8648-9908Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Developmental Biology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:gene regulatory network inference· 2 Organism:Arabidopsis· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1

Frequent Co-Authors

Kostas D. MathiopoulosiD· 2 shared Maria‐Eleni GregoriouiD· 2 shared Adrienne A. UnsworthiD· 1 shared Alexandros Belavilas-TrovasiD· 1 shared Alexis ComberiD· 1 shared Anastasia ResteuiD· 1 shared Anthony BayegaiD· 1 shared Antonis GiannakakisiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

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2 shared papersMolecular Biology

Kostas D. MathiopoulosORCID

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Author profile →

4 papers

Recent·Most cited

BioinformaticsBioinformatics AdvancesPeer-reviewedJan 1, 2026

lncAPNet enables the deciphering of lncRNA and mRNA connections in patient transcriptomic data

Vasileios Vasileiou, George I. Gavriilidis, Pedro Faria Zeni…·F. Psomopoulos

lncAPNet identifies lncRNA-mRNA interactions in cancer transcriptomic data using a graph-based deep learning framework, revealing lncRNA drivers in CLL and PRAD.

DOI 10.1093/bioadv/vbag204

humanbulk RNA-seq

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BioinformaticsbioRxivPreprintJan 17, 2025

STExplorer: Navigating the Micro-Geography of Spatial Omics Data

Eleftherios Zormpas, Nikolaos I. Vlachogiannis, Anastasia Resteu…·Simon Cockell

STExplorer applies computational geography methods to spatial transcriptomics data to uncover spatially resolved patterns and heterogeneity.

1 citation

spatial transcriptomicsstatistical model

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Molecular BiologyFrontiers in Bioengineering and BiotechnologyPeer-reviewedAug 24, 2022

A species-specific lncRNA modulates the reproductive ability of the Asian tiger mosquito

Alexandros Belavilas-Trovas, Maria‐Eleni Gregoriou, Spyros Tastsoglou…·Kostas D. Mathiopoulos

The paper identifies lncRNAs in the Asian tiger mosquito that regulate reproductive traits and shows their impact on fecundity and hatching rates.

16 citations

Arabidopsisbulk RNA-seq

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Developmental BiologyScientific ReportsPeer-reviewedApr 12, 2021

Transcriptome landscape of the developing olive fruit fly embryo delineated by Oxford Nanopore long-read RNA-Seq

Anthony Bayega, Spyros Oikonomopoulos, Maria‐Eleni Gregoriou…·Jiannis Ragoussis

This study uses Oxford Nanopore long-read RNA-Seq to characterize the transcriptome of the olive fruit fly embryo during early development, revealing novel genes and transcriptional dynamics.

29 citations

long-read sequencingstatistical model

𝕏 PostBluesky