Author

Shams ur Rehman

Peking UniversityORCID 0000-0001-8755-3780Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Plant Biology· 2 Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:plant (other)· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Research Focus:cancer & tumor microenvironment· 1 Research Focus:cell type annotation· 1 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1

Frequent Co-Authors

Hongna LiiD· 2 shared Shisheng CheniD· 2 shared Xiaohua HaoiD· 2 shared Ahmed yassin· 1 shared Chaozhong ZhangiD· 1 shared Daolin FuiD· 1 shared Falak Sher Khan· 1 shared Guiping WangiD· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersPlant Biology

Hongna LiORCID

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4 papers

Recent·Most cited

BioinformaticsbioRxivPreprintAug 20, 2026

PlantOmicsGWAS: An end-to-end, reproducible framework for plant genome-wide association and genomic prediction using linear and pan-genome references

Falak Sher Khan, Ahmed yassin, Shams ur Rehman…·Wenxiu Ye

PlantOmicsGWAS provides a reproducible framework for plant GWAS and genomic prediction, supporting both linear and pan-genome references to improve analysis of structural variations.

DOI 10.64898/2026.08.16.745120

plant (other)whole-genome sequencing

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Plant BiologybioRxivPreprintNov 9, 2025

Identification and Development of Functional Markers Associated with Triple Pistil Phenotype in Wheat

Qasim Saleem Raza, Qilu Song, Shams ur Rehman, Zulfiqar Ali

This study identifies two genes associated with triple pistil phenotype in wheat and develops functional markers for early trait selection in hybrid breeding programs.

DOI 10.1101/2025.11.09.687415

plant (other)imaging

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Plant BiologyPlant Biotechnology JournalPeer-reviewedFeb 5, 2025

Manipulation of the brown glume and internode 1 gene leads to alterations in lignified tissue coloration, lignification, and pathogen resistance in wheat

Lei Hua, Rui Yin Song, Xiaohua Hao…·Shisheng Chen

This study identifies and characterizes the BGI1 gene in wheat, showing its role in lignin biosynthesis and pathogen resistance through loss-of-function and overexpression experiments.

24 citationstop 1%

experimental assaycancer & tumor microenvironment

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GenomicsScientific DataPeer-reviewedDec 31, 2024

Chromosome-scale assembly and annotation of the wildwheat relative Aegilops comosa

Hongna Li, Shamsur Rehman, Rui Song…·Shisheng Chen

The paper presents a chromosome-level genome assembly of Aegilops comosa using PacBio and Hi-C data, annotates 39,063 genes, and identifies a terminal intrachromosomal translocation in chromosome 2M.

10 citations

whole-genome sequencingexperimental assay

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