Karishma Chhugani

Robust software development practices improve citations of RNA-seq tools

This study shows that better software development practices for RNA-seq tools lead to more citations, as evidenced by a strong statistical association between development quality and citation counts.

Assessing genomic reproducibility of read alignment tools

This study evaluates the reproducibility of eight read alignment tools using synthetic replicates, finding significant variability in their performance and impact on downstream variant calling.

A comprehensive benchmarking of WGS-based structural variant callers

This study benchmarks WGS-based structural variant callers using a PCR-confirmed gold standard, finding wide performance variation and identifying tools best suited for low and ultra-low pass data.