Author

Paschalia Kapli

Natural History MuseumORCID 0000-0001-8769-8779Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:phylogenetics / evolution· 2 Approach:statistical model· 2 Approach:Bayesian inference· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Assay:DNA methylation· 1 Research Focus:software / tool· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Alexandros StamatakisiD· 2 shared Sarah LutteroppiD· 2 shared Ana Serra SilvaiD· 1 shared Aurélien MirallesiD· 1 shared Jacques DucasseiD· 1 shared Jeet SukumaraniD· 1 shared Jiajie Zhang· 1 shared Kassian Kobert· 1 shared

Activity by Year

2017-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersBioinformatics

Alexandros StamatakisORCID

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3 papers

Recent·Most cited

Evolutionary BiologyCurrent BiologyPeer-reviewedJul 15, 2025

Support for the deuterostome clade comes from systematic errors

Ana Serra Silva, Paschalis Natsidis, Laura Piovani…·Maximilian J. Telford

The paper investigates whether deuterostome monophyly is supported by systematic errors, finding strong support under certain conditions and ambiguity when errors are mitigated.

14 citationstop 4%

statistical modelphylogenetics / evolution

𝕏 PostBluesky

BioinformaticsMolecular Ecology ResourcesPeer-reviewedJul 20, 2021

SPART, a versatile and standardized data exchange format for species partition information

Aurélien Miralles, Jacques Ducasse, Sophie Brouillet…·Nicolas Puillandre

The paper introduces SPART, a standardized format for exchanging species partition information, to improve interoperability among species delimitation tools.

53 citations

database / resource

𝕏 PostBluesky

BioinformaticsBioinformaticsPeer-reviewedJan 20, 2017

Multi-rate Poisson Tree Processes for single-locus species delimitation under Maximum Likelihood and Markov Chain Monte Carlo.

Paschalia Kapli, Sarah Lutteropp, Jiajie Zhang…·Tomas Flouri

This paper introduces mPTP, an improved method for species delimitation that addresses limitations of PTP by incorporating intraspecific variation and using a faster algorithm, achieving better accuracy and scalability.

DOI 10.1093/bioinformatics/btx025

DNA methylationstatistical model

𝕏 PostBluesky