Sarah Lutteropp

NetRAX infers maximum likelihood phylogenetic networks without incomplete lineage sorting, efficiently handling larger datasets than existing tools.

SpeciesRax infers species trees from gene family trees, accounting for duplication, transfer, and loss, and is accurate and faster than existing methods.

The paper introduces SPART, a standardized format for exchanging species partition information, to improve interoperability among species delimitation tools.

SCRAPP quantifies microbial sample diversity using phylogenetic placements and clustering, outperforming existing methods on empirical data.

The paper presents a faster and more memory-efficient implementation of the Transfer Bootstrap Expectation method for phylogenetic analysis.

This paper introduces mPTP, an improved method for species delimitation that addresses limitations of PTP by incorporating intraspecific variation and using a faster algorithm, achieving better accuracy and scalability.

The paper presents two open-source implementations of the TKF91 algorithm, developed by students as part of a programming course, showing identical results with minor numerical differences.