Author
University of AucklandORCID 0000-0001-8830-6212Unclaimed ORCID profile · follow to get notified of new preprints
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4 papers
Recent·Most cited
Jagir R. Hussan, Anand Rampadarath, David Phillip Nickerson, Peter John Hunter
This paper develops a multiscale model to explain how plant genomic regulation enhances the mechanical stability of extracellular vesicles through composite reinforcement mechanisms.
Yuda Munarko, Anand Rampadarath, David Phillip Nickerson
CASBERT improves entity retrieval in biosimulation models using BERT embeddings, outperforming bag-of-words methods in precision and recall.
Yuda Munarko, Dewan Mahabub Sarwar, Anand Rampadarath…·David Phillip Nickerson
NLIMED converts natural language queries into SPARQL to discover model entities from biosimulation model repositories.
Woosub Shin, Joseph L. Hellerstein, Yuda Munarko…·John H. Gennari
SBMate evaluates annotation quality in systems biology models using coverage, consistency, and specificity metrics on 1,000 BioModels repository models.