Author

Chengcheng Song

BGI Group (China)ORCID 0000-0001-8846-6048Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 2 Research Focus:variant calling· 2 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Assay:long-read sequencing· 1 Research Focus:variant effect prediction· 1 Assay:whole-exome sequencing· 1

Frequent Co-Authors

Ai-Ming Yu· 1 shared Chunli WangiD· 1 shared Dongju CheniD· 1 shared Hongxu DingiD· 1 shared Katherine K. WangiD· 1 shared Mei‐Juan TuiD· 1 shared Minghui Shao· 1 shared Pei MengiD· 1 shared

Activity by Year

2021-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBioinformatics

Ai-Ming Yu

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintSep 12, 2024

The Precise Basecalling of Short-Read Nanopore Sequencing

Ziyuan Wang, Mei‐Juan Tu, Chengcheng Song…·Hongxu Ding

This paper develops a basecalling scheme for short-read nanopore sequencing, showing improved accuracy using bioengineered RNA molecules.

2 citations

long-read sequencingstatistical model

𝕏 PostBluesky

BioinformaticsBMC BioinformaticsPeer-reviewedNov 23, 2021

GSA: An Independent Development Algorithm for Calling Copy Number and Detecting Homologous Recombination Deficiency (HRD) from Target Capture Sequencing

Dongju Chen, Minghui Shao, Pei Meng…·Taiping Shi

This paper introduces GSA, an algorithm for calculating tumor purity, ploidy, and HRD scores from target capture sequencing data, showing high accuracy and sensitivity in clinical samples.

21 citations

whole-exome sequencingstatistical model

𝕏 PostBluesky