Author

Joshua R. York

Northwestern UniversityORCID 0000-0001-8853-4880Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Developmental Biology· 2 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:deep learning· 1 Assay:fluorescence / live-cell microscopy· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Organism:mouse· 1

Frequent Co-Authors

Carole LaBonneiD· 3 shared Ashlyn Y. TuiD· 1 shared Austin P. Li· 1 shared Che-Yi LiniD· 1 shared Daniel KeitleyiD· 1 shared Èlia Benito‐GutiérreziD· 1 shared Elizabeth N. SchockiD· 1 shared Giacomo GattoniiD· 1 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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3 shared papersDevelopmental Biology

Carole LaBonneORCID

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3 papers

Recent·Most cited

Developmental BiologyDevelopmentPeer-reviewedApr 28, 2025

Kruppel-like Factors Play Essential Roles in Regulating Pluripotency and the Formation of Neural Crest Stem Cells

Sara Rigney, Joshua R. York, Carole LaBonne

The paper investigates the role of Kruppel-like factors in regulating pluripotency and neural crest stem cell formation in Xenopus and lamprey, finding that klf17, not klf4, is ancestral in these processes.

3 citations

experimental assay

𝕏 PostBluesky

Evolutionary BiologybioRxivPreprintApr 23, 2025

Evolutionary dynamics of FoxQ2 transcription factors across metazoans: A tale of three ancient paralogs

Giacomo Gattoni, Che-Yi Lin, Joshua R. York…·Èlia Benito‐Gutiérrez

This paper analyzes the evolutionary dynamics of FoxQ2 transcription factors across metazoans, identifying three ancient paralogs and revealing conserved and novel expression patterns in chordates.

DOI 10.1101/2025.04.23.650082

humanmouse

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Developmental BiologyDevelopmentPeer-reviewedJun 28, 2024

SoxB1 transcription factors are essential for initiating and maintaining the neural plate border gene expression

Elizabeth N. Schock, Joshua R. York, Austin P. Li…·Carole LaBonne

This study shows SoxB1 factors are essential for NPB formation and maintenance, and identifies Pou5f3 as a partner in regulating NPB gene expression.

7 citations

experimental assay

𝕏 PostBluesky