Author

Dani E. Bergey

Institute for Systems BiologyORCID 0000-0001-8889-1546Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Dani E. Bergey1 paper · University of Illinois Chicago

Biology Disciplines

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Genetics· 1 Neuroscience· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Assay:ChIP-seq· 2 Approach:experimental assay· 2 Organism:human· 2 Organism:mouse· 2 Research Focus:cell type annotation· 1

Frequent Co-Authors

Jocelynn R. PearliD· 3 shared Leroy HoodiD· 3 shared Nathan D. PriceiD· 3 shared Seth A. AmentiD· 3 shared Jeffrey B. CarrolliD· 2 shared Robert M. BraggiD· 2 shared Sydney R. CoffeyiD· 2 shared Alex M. CasellaiD· 1 shared

Activity by Year

2016-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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3 shared papersNeuroscience

Jocelynn R. PearlORCID

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3 papers

Recent·Most cited

NeuroscienceDisease Models & MechanismsPeer-reviewedApr 10, 2025

Altered Huntingtin-Chromatin Interactions Predict Transcriptional and Epigenetic Changes in Huntington's Disease Mouse Models

Jocelynn R. Pearl, Amol Carl Shetty, Jeffrey P. Cantle…·Jeffrey B. Carroll

The paper identifies altered huntingtin-chromatin interactions in HD mouse models, linking them to transcriptional and epigenetic changes in striatal tissue.

5 citations

𝕏 PostBluesky

GeneticsCell SystemsPeer-reviewedFeb 1, 2019

Genome-scale transcriptional regulatory network models of psychiatric and neurodegenerative disorders

Jocelynn R. Pearl, Carlo Colantuoni, Dani E. Bergey…·Seth A. Ament

The paper constructs a brain-specific transcriptional regulatory network model to identify core transcription factors involved in psychiatric and neurodegenerative diseases.

64 citations

𝕏 PostBluesky

Systems BiologybioRxivPreprintNov 10, 2016

Genome-scale transcriptional regulatory network models for the mouse and human striatum predict roles for SMAD3 and other transcription factors in Huntington’s disease

Seth A. Ament, Jocelynn R. Pearl, Robert M. Bragg…·Nathan D. Price

The paper builds genome-scale transcriptional regulatory networks for mouse and human striatum, identifying SMAD3 as a key regulator in Huntington’s disease.

2 citations

𝕏 PostBluesky