Author

Zachary Caterer

University of Colorado BoulderORCID 0000-0001-9019-0730Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:imaging· 1 Approach:machine learning (classical)· 1 Assay:scRNA-seq· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Ankita Kulshrestha· 1 shared Blake Mathisen· 1 shared Carly WeberiD· 1 shared Chase N. NelsoniD· 1 shared Fan ZhangiD· 1 shared Hui Siang Benjamin LeeiD· 1 shared Ireland Coughlin· 1 shared Jade YoungiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperBioinformatics

Ankita Kulshrestha

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2 papers

Recent·Most cited

A graphical user interface for wrmXpress 2.0 streamlines helminth phenotypic screening

Zachary Caterer, Rachel V Horejsi, Carly Weber, Blake Mathisen, Chase N. Nelson, Maggie Bagatta, Ireland Coughlin, Megan Wettstein, Ankita Kulshrestha, Hui Siang Benjamin Lee, Leonardo R Nunn, Mostafa Zamanian, Nicolas James Wheeler

The paper develops a graphical user interface for wrmXpress 2.0 to streamline image-based phenotypic screening of helminths, making analysis more accessible without requiring command-line expertise.

International Journal for Parasitology Drugs and Drug Resistance · Mar 20, 2025Peer-reviewedBioinformatics

CellPhenoX: An eXplainable Cell-specific machine learning method to predict clinical Phenotypes using single-cell multi-omics

Jade Young, Jun Inamo, Zachary Caterer, Revanth Krishna, Fan Zhang

CellPhenoX identifies cell-specific phenotypes linked to clinical outcomes using single-cell multi-omics data, demonstrating its ability to detect relevant phenotypes in diseases like COVID-19 and ulcerative colitis.

bioRxiv · Jan 24, 2025 · PreprintBioinformatics