Author

Yohey Ogawa

National Institute of GeneticsORCID 0000-0001-9031-4393Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Evolutionary Biology· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:zebrafish· 3 Research Focus:gene regulatory network inference· 2 Assay:whole-genome sequencing· 2 Assay:ATAC-seq· 1 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

Akane KawaguchiiD· 2 shared Shigehiro KurakuiD· 2 shared Ala MorshedianiD· 1 shared Alapakkam P. SampathiD· 1 shared Connie A. Myers· 1 shared Daisuke KojimaiD· 1 shared Gordon FainiD· 1 shared Joseph C. CorboiD· 1 shared

Activity by Year

2021-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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2 shared papersGenomics

Akane KawaguchiORCID

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4 papers

Recent·Most cited

GenomicsbioRxivPreprintOct 16, 2026

Near-complete genome assembly of the African turquoise killifish enables locus-level profiling of transposable element expression

Yohey Ogawa, Akane Kawaguchi, Kota Abe…·Shigehiro Kuraku

The paper presents a near-complete genome assembly of the African turquoise killifish and evaluates how TR detection programs and TE workflows affect TE expression profiling.

DOI 10.64898/2026.10.12.757905

zebrafishwhole-genome sequencing

GenomicsGenome ResearchPeer-reviewedAug 1, 2026

Tracing genome size dynamics in sharks and rays with inclusive sequence analysis by the Squalomix Consortium

Shigehiro Kuraku, Yawako W. Kawaguchi, Taiki Niwa…·Akane Kawaguchi

The paper presents whole genome sequences of two elasmobranchs, analyzing genome size dynamics and genomic architecture, revealing correlations between chromosome size, repetitive elements, and gene duplication patterns.

4 citations

whole-genome sequencingstatistical model

Evolutionary BiologyScience AdvancesPeer-reviewedDec 12, 2025

Conservation of cis-regulatory codes over half a billion years of evolution

Yohey Ogawa, Yu Liu, Connie A. Myers…·Joseph C. Corbo

The paper shows that cis-regulatory codes in retinal cell classes are highly conserved across vertebrates despite extensive enhancer turnover.

10 citations

humanmouse

NeuroscienceScience AdvancesPeer-reviewedOct 8, 2021

Foxq2 determines blue cone identity in zebrafish

Yohey Ogawa, Tomoya Shiraki, Yoshitaka Fukada, Daisuke Kojima

This study identifies Foxq2 as a key regulator of blue cone identity in zebrafish by driving sws2 opsin expression and shows its conservation across vertebrates.

40 citations

zebrafishstatistical model