Author

Tomoya Shiraki

National Institute of GeneticsORCID 0000-0003-0447-007XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Neuroscience· 2

Signature Assays, Organisms & Methods

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Organism:zebrafish· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1

Frequent Co-Authors

Atsushi ToyodaiD· 1 shared Chung‐Han WangiD· 1 shared Daisuke KojimaiD· 1 shared Fumi KuboiD· 1 shared Hisaya Kakinuma· 1 shared Koichi KawakamiiD· 1 shared Kōji MatsudaiD· 1 shared Yohey OgawaiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 18 mutual co-author links

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1 shared paperNeuroscience

Atsushi ToyodaORCID

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2 papers

Recent·Most cited

NeuroscienceNature CommunicationsPeer-reviewedApr 17, 2026

Molecular and functional dissection using CaMPARI-seq reveals the neuronal organization for dissociating optic flow-dependent behaviors

Kōji Matsuda, Chung‐Han Wang, Hisaya Kakinuma…·Fumi Kubo

The paper uses CaMPARI-seq to identify neuronal subtypes in the zebrafish pretectum involved in distinguishing optic flow patterns for different behaviors.

1 citation

zebrafishscRNA-seq

𝕏 PostBluesky

NeuroscienceScience AdvancesPeer-reviewedOct 8, 2021

Foxq2 determines blue cone identity in zebrafish

Yohey Ogawa, Tomoya Shiraki, Yoshitaka Fukada, Daisuke Kojima

This study identifies Foxq2 as a key regulator of blue cone identity in zebrafish by driving sws2 opsin expression and shows its conservation across vertebrates.

40 citations

zebrafishstatistical model

𝕏 PostBluesky