Shunping He

FishMamba-1 is a linear-complexity foundation model designed for polyploid Cyprinid genomes, achieving high precision in gene annotation without RNA-seq evidence.

GageTracker dates gene age using micro- and macro-synteny with high speed and accuracy, outperforming existing tools in alignment quality and speed.

The paper analyzes 630 aquatic vertebrate genomes to create a compendium, revealing TE diversity and gene family evolution related to the water-to-land transition.

The paper announces the Fish10K project to sequence 10,000 fish genomes and describes a workflow for biospecimen procurement, sequencing, and assembly.