Angel G. Rivera‐Colón

This study examines genome evolution in the Pacific acorn barnacle, showing high polymorphism and evidence of positive selection in large populations.

MKado performs McDonald-Kreitman tests of natural selection using aligned coding sequences, offering extensions and visualization tools.

pg_gpu accelerates population genetics statistics on GPUs, achieving significant speedups over CPU implementations while maintaining accuracy.

The paper analyzes population structure in Culex pipiens using genomic data from a WNV hotspot, finding that ecotypes, Wolbachia infection, and habitat type drive genetic variation.

This paper presents the first high-quality long-read genome of the Antarctic bald notothen, revealing its genome structure and repetitive elements, and highlights its potential as a model for cold adaptation studies.

This study presents a chromosome-level genome assembly of Eleginops maclovinus and compares its circadian gene repertoire with Antarctic cryonotothenioids, finding greater conservation with the Antarctic clade.

The paper develops a quantitative model to understand PCR duplicate formation in sequencing datasets and shows library complexity and sequencing depth determine duplicate rates.

The paper studies the genetic basis of secondarily temperate adaptation in the pike icefish by comparing its genome to its Antarctic relative, identifying chromosomal rearrangements and selected pathways.

The paper provides a detailed protocol for RAD analysis using STACKS 2, covering experimental design, parameter optimization, and analysis from de novo to reference-based approaches.

RADinitio simulates RADseq experiments to optimize protocol selection and identifies library preparation and sequencing as major sources of missing data.

The paper investigates the genetic basis of eyespot number variation in Bicyclus anynana butterflies, finding that multiple loci, not single master regulators, influence this trait.

Stacks 2 improves RADseq-based population genomics by using paired-end sequencing to assemble and genotype de novo datasets with high accuracy.

The paper investigates the genetic basis of hindwing eyespot number variation in Bicyclus anynana butterflies, finding moderate heritability and multiple loci associated with eyespot number.