Author

Olivier Restif

University of CambridgeORCID 0000-0001-9158-853XUnclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Olivier Restif1 paper

Biology Disciplines

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Bioinformatics· 1 Ecology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 3 Approach:statistical model· 3 Research Focus:gene regulatory network inference· 2 Assay:metagenomics· 2 Research Focus:variant calling· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Approach:experimental assay· 1

Frequent Co-Authors

Alexander W. TuckeriD· 1 shared Andrew J. BalmeriD· 1 shared Andrew J. GrantiD· 1 shared Daniel J. BeckeriD· 1 shared Duncan J. MaskelliD· 1 shared Elizabeth M. Lay· 1 shared Gemma G. R. MurrayiD· 1 shared Harriet BartletiD· 1 shared

Activity by Year

2022-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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1 shared paperBioinformatics

Alexander W. TuckerORCID

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3 papers

Recent·Most cited

EcologyPLoS neglected tropical diseasesPeer-reviewedNov 7, 2025

Paramyxoviruses in Old World fruit bats (Pteropodidae): an open database and synthesis of sampling effort, viral positivity, and coevolution

Maya M. Juman, Olivier Restif, Daniel J. Becker

This study compiles an open database of paramyxovirus studies in Old World fruit bats, identifies sampling biases, and finds evidence of host-switching among pteropodids.

4 citations

mousemetagenomics

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GenomicsbioRxivPreprintSep 12, 2025

Mapping the Phenotypic Landscape of Beta-lactam Resistance in Streptococcus pneumoniae

Andrew J. Balmer, Gemma G. R. Murray, Stephanie W. Lo…·Lucy A. Weinert

The paper develops a framework to analyze multivariate beta-lactam resistance in Streptococcus pneumoniae using MIC data from 3,628 isolates, revealing genetic mutations and lineage-specific resistance profiles.

1 citation

bacteria (other)whole-genome sequencing

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BioinformaticsPLoS GeneticsPeer-reviewedMar 14, 2022

HAM-ART: An optimised culture-free Hi-C metagenomics pipeline for tracking antimicrobial resistance genes in complex microbial communities.

Lajos Kalmár, Srishti Gupta, Iain Robert Louis Kean…·Mark A. Holmes

HAM-ART improves metagenomics by linking AMR genes to host chromosomes and plasmids, showing differences in AMR gene distribution between pig farms with varying antibiotic use.

34 citations

metagenomicsexperimental assay

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