Author

Jean‐François Martin

Institut Agro MontpellierORCID 0000-0001-9176-4476Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 1 Approach:experimental assay· 1 Assay:metagenomics· 1 Organism:plant (other)· 1 Approach:simulation· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

André Gilles AiD· 1 shared Arnaud UngaroiD· 1 shared Catherine Wipf‐Scheibel· 1 shared Jean‐Philippe MévyiD· 1 shared Karine BerthieriD· 1 shared Maxime GalaniD· 1 shared Nicolas PechiD· 1 shared R. J. Scott McCairnsiD· 1 shared

Activity by Year

2017-2017 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperGenomics

André Gilles AORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

GenomicsPLoS ONEPeer-reviewedSep 20, 2017

Challenges and advances for transcriptome assembly in non-model species

Arnaud Ungaro, Nicolas Pech, Jean‐François Martin…·André Gilles A

This paper evaluates blastn-based transcriptome-guided assembly for non-model species, showing it outperforms de novo assembly in gene recovery despite divergence and read length challenges.

70 citations

whole-genome sequencingstatistical model

𝕏 PostBluesky

Molecular BiologybioRxivPreprintJul 26, 2017

High throughput amplicon sequencing to assess within- and between-host genetic diversity in plant viruses

Sylvain Piry, Catherine Wipf‐Scheibel, Jean‐François Martin…·Karine Berthier

The paper develops an HTAS approach to assess genetic diversity of plant viruses within and between hosts, demonstrating methods to estimate bias and implement automated variant calling.

6 citations

plant (other)metagenomics

𝕏 PostBluesky