Molecular BiologybioRxivPreprint
Integrating single-cell and bulk transcriptomes identifies neuronal heat-stress-associated candidate genes in a reef-building coral
DOI 10.64898/2026.10.05.756843
Author
Ruiqi Li
University of Colorado BoulderORCID 0000-0001-9428-6094Unclaimed ORCID profile · follow to get notified of new preprints
Additional preprints under this name without ORCID
Biology Disciplines
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2025-2026 · peak 3/yrCo-Author Collaboration Network
10 top collaborators · 18 mutual co-author linksFocal author (center)Selected co-authorORCID co-authorUnlinked name
Curved chords = mutual co-authorship5 papers
Recent·Most cited
- GenomicsbioRxivPreprint
Genomic variation associated with endosymbiont shuffling and areal growth in the endangered elkhorn coral, Acropora palmata
Ruiqi Li, Holland Elder, Grace McDermitt…·Carly Danielle Kenkel
The paper identifies genomic variants associated with endosymbiont shuffling and areal growth in Acropora palmata using genome-wide association and gene expression data.
DOI 10.64898/2026.08.14.744775 - PhysiologyPLoS ONEPeer-reviewed
Heat stress disrupts early development and photosymbiosis in Cassiopea jellyfish
Celeste Robinson, Jingchun Li, Ruiqi Li, Viridiana Avila‐Magaña
This study examines how heat stress affects the development and photosymbiosis of Cassiopea jellyfish, finding reduced chlorophyll in algae, delayed metamorphosis, and abnormal ephyra morphology.
DOI 10.1371/journal.pone.0323922 - GenomicsbioRxivPreprint
The Dark Side of Photosymbiosis: Elaborate Repeats with TEs and Unknown ORFs in Photosymbiotic Bivalves Made Exceptionally Big Metazoan Mitogenomes
Andy Dick Yee Tan, Ruiqi Li, Jingchun Li
The paper uses long-read sequencing to reveal expanded mitogenomes in photosymbiotic bivalves, uncovering novel repetitive sequences and genetic elements in non-coding regions.
DOI 10.1101/2025.01.13.632863 - GenomicsCommunications BiologyPeer-reviewed
Photosymbiosis Shaped Animal Genome Architecture and Gene Evolution as Revealed in Giant Clams
Ruiqi Li, Carlos Leiva, Sarah Lemer…·Jingchun Li
This study uses the giant clam genome to show how long-term photosymbiosis has shaped genome architecture and gene evolution in metazoans.