Ruud Stoof

The paper characterizes 20 genetic NOT inverters across 7 bacterial contexts, showing context-dependent behaviors that enhance circuit compatibility and interoperability in synthetic biology.

FlowScatt removes volume-dependency in flow cytometry fluorescence measurements by recalculating fluorescence based on scattering-derived cell volume.

This paper models co-translational dimerization to enable tunable nonlinearity in synthetic gene circuits.

The paper develops a model that incorporates spatial constraints in bacterial gene regulatory circuits to predict output levels based on physical distances between DNA components.