Author

Everett Peter Greenberg

University of WashingtonORCID 0000-0001-9474-8041Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 3 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Approach:deep learning· 1

Frequent Co-Authors

Amy L. SchaeferiD· 2 shared Nicole E. SmalleyiD· 2 shared Ajai A. DandekariD· 1 shared Bianxia Bai· 1 shared Charlotte MulliganiD· 1 shared Davi Nakajima AniD· 1 shared Frank DiMaioiD· 1 shared Kiana R Bellamoroso· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersBiochemistry

Amy L. SchaeferORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

COPAL: An ensemble of protein-ligand co-folding models enriches preferred ligand predictions for the LuxR-family of quorum sensing receptors

Davi Nakajima An, Amy L. Schaefer, Szu-Min Chang, Bianxia Bai, Charlotte Mulligan, Yasuhiro Oda, Everett Peter Greenberg, Frank DiMaio

COPAL uses an ensemble of protein-ligand co-folding models to predict preferred AHL ligands for LuxR receptors, achieving higher accuracy than individual models.

bioRxiv · Sep 9, 2026 · PreprintBiochemistry

Inactivation of MexT in Pseudomonas aeruginosa destabilizes cooperation and favors the emergence of a unique quorum sensing variant

Kiana R Bellamoroso, Maxim Kostylev, Nicole E. Smalley, Everett Peter Greenberg, Ajai A. Dandekar

The paper shows that inactivating MexT in Pseudomonas aeruginosa destabilizes cooperation and promotes the emergence of a specific LasR variant.

bioRxiv · Sep 19, 2025 · PreprintMicrobiology

The Relationship of pqs Gene Expression to Acylhomoserine Lactone Signaling in Pseudomonas aeruginosa

Martín P. Soto‐Aceves, Nicole E. Smalley, Amy L. Schaefer, Everett Peter Greenberg

This study investigates the role of pqsR and pqsE in the QS regulon of P. aeruginosa, finding limited influence of PqsR and conditional influence of PqsE on gene activation.

Journal of Bacteriology · Sep 5, 2024Peer-reviewedMicrobiology