Kumari Sonal Choudhary

The paper introduces scCLEAN, a CRISPR/Cas9-based method to enhance single-cell transcriptomics by improving library complexity and isoform detection.

MetENP and MetENPWeb provide tools for metabolomics enrichment and pathway analysis using data from the Metabolomics Workbench.

The paper identifies regulons of five two-component systems in E. coli using RNA-seq and ChIP-exo data, revealing novel regulatory relationships and non-cognate inducers.

The paper reconstructs the Fur pan-regulon in E. coli strains, revealing core, accessory, and unique regulons and their functional diversity.

The paper decomposes the Escherichia coli transcriptome into 70 independent regulatory signals, showing that 50 correspond to known transcriptional regulators and revealing a principle of signal summation in prokaryotic gene regulation.