Author
Lawrence Berkeley National LaboratoryORCID 0000-0001-9557-7715Unclaimed ORCID profile · follow to get notified of new preprints
4 papers
Recent·Most cited
Andrew Freiburger, José P. Faria, Ruijie Zhu…·Samuel M. D. Seaver
The paper updates the ModelSEED Biochemistry Database with expanded compounds and reactions, integrating multi-source thermodynamic data and grading reaction reliability.
Abigayle M. R. Simpson, Elisha M. Wood‐Charlson, Montana L. Smith…·Roland C. Wilhelm
The paper introduces a data standard (MISIP) to improve reproducibility and reuse of stable isotope probing (SIP) sequencing data by defining essential metadata fields.
Michael Shaffer, Mikayla Borton, Benjamin Bolduc…·Kelly C. Wrighton
kb_DRAM integrates DRAM tools into KBase for microbial and viral genome annotation and metabolic modeling through a user-friendly interface.
Samuel M. D. Seaver, Filipe Liu, Qizhi Zhang…·Christopher S. Henry
The paper introduces the ModelSEED biochemistry database, which integrates metabolic annotations and supports the reconstruction and analysis of metabolic models for plants, fungi, and microbes.