Author

Abigayle M. R. Simpson

Purdue University West LafayetteORCID 0000-0003-1714-6535Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Assay:metagenomics· 2 Research Focus:benchmarking· 1 Research Focus:development & morphogenesis· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1 Research Focus:metabolism & bioenergetics· 1 Organism:mouse· 1

Frequent Co-Authors

Jeffrey A. KimbreliD· 2 shared Roland C. WilhelmiD· 2 shared Alex Batista TrentiniD· 1 shared Benjamin J. KochiD· 1 shared Chris HunteriD· 1 shared Elisha M. Wood‐CharlsoniD· 1 shared Kathleen R. BeilsmithiD· 1 shared Lavanya ReddivariiD· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersBioinformatics

Jeffrey A. KimbrelORCID

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3 papers

Recent·Most cited

BioinformaticsISME CommunicationsPeer-reviewedJan 1, 2026

SIPdb: A stable isotope probing database and analytical dashboard for linking amplicon sequences to microbial activity using a reverse ecology approach

Alex Batista Trentin, Abigayle M. R. Simpson, Jeffrey A. Kimbrel…·Roland C. Wilhelm

The paper introduces SIPdb, a database and analysis tool for linking microbial amplicon sequences to metabolic activity using SIP data, showing it recovers 70.1% of reported incorporators and validates known degraders.

1 citation

metagenomicsstatistical model

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MicrobiologyNutrientsPeer-reviewedApr 6, 2024

A gnotobiotic mouse model with divergent equol-producing phenotype: potential for determining microbial-driven health impacts of soy isoflavone daidzein

Lindsay M. Leonard, Abigayle M. R. Simpson, Shiyu Li…·T.-W. L. Cross

This paper develops a gnotobiotic mouse model to mimic human equol production and assess its health impacts.

6 citations

mouseexperimental assay

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BioinformaticsGigaSciencePeer-reviewedJan 1, 2024

A data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence (MISIP)

Abigayle M. R. Simpson, Elisha M. Wood‐Charlson, Montana L. Smith…·Roland C. Wilhelm

The paper introduces a data standard (MISIP) to improve reproducibility and reuse of stable isotope probing (SIP) sequencing data by defining essential metadata fields.

11 citations

metagenomicsdatabase / resource

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