David Roy Smith

The paper analyzes intergenic regions in mitochondrial and plastid genomes to show that opposite-polarity gene pairs have longer intergenic DNA than same-polarity pairs.

The paper provides improvements to the MCScanX protocol for more accurate identification of colinear blocks by addressing missing pre-processing steps for alternative splicing.

The paper introduces a protocol for creating and implementing gene dictionaries across annotated genomes using a Python CLI and Jupyter Notebooks, producing FAIR-compliant .gdict files.

The plastid genomes of two free-living chlamydomonadalean algae show different evolutionary trajectories after losing photosynthesis.

HSDatabase curates and provides access to 117,864 highly similar duplicate genes from 40 eukaryotic genomes for comparative analysis and integration with other tools.