Author

Shanshan Pei

First Affiliated Hospital Zhejiang UniversityORCID 0000-0001-9619-2614Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1

Frequent Co-Authors

Guangxin ZhangiD· 1 shared Haishuai WangiD· 1 shared Hongying Lin· 1 shared Jiajun Yu· 1 shared Jikai Shao· 1 shared Jinnan Sun· 1 shared Jun PengiD· 1 shared Mengyang Chen· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperGenomics

Guangxin ZhangORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintOct 11, 2026

Scalable methylome-transcriptome profiling resolves clonal organization in human hematopoiesis

Jikai Shao, Mengyang Chen, Yan Liu…·Shouwen Wang

This paper introduces Droplet-MT, a method for joint methylome and transcriptome profiling, enabling clonal organization analysis in human hematopoiesis with high scalability and resolution.

DOI 10.64898/2026.10.08.757494

humanDNA methylation

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BioinformaticsbioRxivPreprintApr 27, 2025

Systematic discovery of single-cell protein networks in cancer with Shusi

Tianyun Zhang, Jiajun Yu, Shang Lou…·Ning Shen

Shusi predicts context-specific protein-protein interactions in cancer using a large language model-enhanced variational graph auto-encoder, identifying actionable vulnerabilities in acute myeloid leukemia.

DOI 10.1101/2025.04.27.649905

humanscRNA-seq

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