Gonzalo Garcia Accinelli

This paper presents a novel haplotype-specific assembly method to resolve the complex genome of Fragilariopsis cylindrus, revealing triploidy, aneuploidy, and sexual reproduction.

The paper analyzes the genetic diversity of Hymenoscyphus fraxineus, showing the European population was founded by two divergent haplotypes with adaptive potential.

This paper introduces skip-mers as an improved method for detecting conserved genic regions, showing increased entropy and sensitivity compared to traditional k-mers.

The paper introduces a pipeline for generating high-quality genome assemblies from short read data, demonstrating its effectiveness on plant and human datasets.

KAT assesses quality and contamination in NGS data and assemblies using k-mer frequencies and GC composition without a reference.