Daniel Mapleson

Portcullis filters false splice junctions from RNA-seq alignments with high accuracy and efficiency, scaling well for large datasets and fragmented genomes.

The paper presents an algorithm to improve transcript annotation by integrating multiple RNA-Seq assemblies and introduces an open-source tool for this purpose.

SPECTRE provides open-source tools for analyzing reticulate evolution using split-networks and supports integration into analysis pipelines.

This study shows that the green peach aphid uses rapid transcriptional changes of duplicated genes to colonize diverse host plants without genetic specialization.

KAT assesses quality and contamination in NGS data and assemblies using k-mer frequencies and GC composition without a reference.