Author

Katherine E. Pendleton

Baylor College of MedicineORCID 0000-0001-9761-7303Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Organism:mouse· 2 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Aliska M. Berry· 1 shared Andrés HernándeziD· 1 shared Benjamin Strope· 1 shared Bum Joon KimiD· 1 shared Daryl A. ScottiD· 1 shared Gloria Vittone EcheverriaiD· 1 shared Hitisha P. Zaveri· 1 shared M. Cecilia LjungbergiD· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperDevelopmental Biology

Aliska M. Berry

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2 papers

Recent·Most cited

Xenomake: a pipeline for processing and sorting xenograft reads from spatial transcriptomic experiments

Benjamin Strope, Katherine E. Pendleton, William Bowie, Gloria Vittone Echeverria, Qian Zhu

Xenomake processes and sorts xenograft reads from spatial transcriptomic experiments, improving data quality and compatibility with downstream analysis.

Bioinformatics · Oct 10, 2024Peer-reviewedBioinformatics

SOX7 deficiency causes ventricular septal defects through its effects on endocardial-to-mesenchymal transition and the expression of Wnt4 and Bmp2

Andrés Hernández, Katherine E. Pendleton, Sangbae Kim, Yumei Li, Bum Joon Kim, Hitisha P. Zaveri, Valerie K. Jordan, Aliska M. Berry, M. Cecilia Ljungberg, Rui Chen, Rainer B. Lanz, Daryl A. Scott

The paper shows SOX7 deficiency causes ventricular septal defects by impairing endocardial-to-mesenchymal transition through reduced Wnt4 and Bmp2 expression in developing atrioventricular canals.

Human Molecular Genetics · Mar 31, 2023Peer-reviewedDevelopmental Biology