Denis Jacob Machado

The paper identifies recombination events in dengue virus genomes using multiple methods and introduces a new tool for improved detection.

HP2NET is a framework for efficient and scalable phylogenetic network analysis using HPC, reducing runtime by up to 90.96% through parallel processing and data reuse.

This study predicts binding affinity between SARS-CoV-2 variants BA.2.86 and JN.1 and antibodies/ACE2 using in silico modeling, finding minor reductions in affinity but no significant immune escape.

EchinoDB is updated to include new RNA-seq and genomic data, improved search features, and cloud-based infrastructure for echinoderm genomic and transcriptomic data.

This study predicts structural changes in the SARS-CoV-2 Omicron variant's spike protein receptor-binding domain and their impact on neutralizing antibody interactions.

This study shows Notch signaling is essential for arm regeneration in brittle stars and identifies its role in regulating extracellular matrix, cell migration, and transposable elements.