Author

Weili Nie

Nvidia (United States)ORCID 0000-0002-0030-3189Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Assay:imaging· 1 Approach:large language model· 1 Research Focus:variant calling· 1 Organism:virus· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Alexander BraceiD· 1 shared Animashree AnandkumariD· 1 shared Ankit PateliD· 1 shared Arash VahdatiD· 1 shared Arvind RamanathaniD· 1 shared Austin ClydeiD· 1 shared Bharat KaleiD· 1 shared Bin ZhangiD· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperBioinformatics

Alexander BraceORCID

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2 papers

Recent·Most cited

BioinformaticsThe International Journal of High Performance Computing ApplicationsPeer-reviewedOct 27, 2023

GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics.

Maxim Zvyagin, Alexander Brace, Kyle Hippe…·Arvind Ramanathan

GenSLMs use large language models to analyze SARS-CoV-2 genomes, enabling rapid identification of variants of concern and providing insights into evolutionary dynamics.

121 citationstop 1%

viruswhole-genome sequencing

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Systems BiologyMicroorganismsPeer-reviewedSep 14, 2021

Quantification of Myxococcus xanthus Aggregation and Rippling Behaviors: Deep-learning Transformation of Phase-contrast into Fluorescence Microscopy Images

Jiangguo Zhang, Jessica A. Comstock, Christopher R. Cotter…·Oleg A. Igoshin

The paper develops a deep-learning model to convert phase-contrast images into fluorescence-like images for better analysis of bacterial aggregation and rippling behaviors in Myxococcus xanthus.

1 citation

bacteria (other)imaging

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